cd-slash
Ecto not using indexes in SQLite causing slow query
I have a relatively large table (~350k rows and ~50 columns) in an existing GADM database that I’m connecting to with Ecto.
I’ve created indexes on the table with the migration below:
defmodule GADM.Migrations.AddIndexes do
use Ecto.Migration
def up do
create(index(:gadm_410, [:gid_0]))
create(index(:gadm_410, [:gid_1]))
create(index(:gadm_410, [:gid_2]))
create(index(:gadm_410, [:gid_3]))
create(index(:gadm_410, [:gid_4]))
create(index(:gadm_410, [:gid_5]))
create(index(:gadm_410, [:country]))
end
def down do
drop(index(:gadm_410, [:gid_0]))
drop(index(:gadm_410, [:gid_1]))
drop(index(:gadm_410, [:gid_2]))
drop(index(:gadm_410, [:gid_3]))
drop(index(:gadm_410, [:gid_4]))
drop(index(:gadm_410, [:gid_5]))
drop(index(:gadm_410, [:country]))
end
end
Ecto.Migrator.down(GADMRepo, 0, GADM.Migrations.AddIndexes)
Ecto.Migrator.up(GADMRepo, 0, GADM.Migrations.AddIndexes)
I’m then making a relatively simple query using Ecto:
import Ecto.Query
id_field_name = String.to_atom("gid_3")
child_id_field_name = String.to_atom("gid_4")
name_field_name = String.to_atom("name_3")
GADM.Region
|> where([r], field(r, ^id_field_name) != "")
|> where([r], field(r, ^child_id_field_name) == "")
|> select([r], %{
gid: field(r, ^id_field_name),
name: field(r, ^name_field_name)
})
|> distinct(true)
|> GADMRepo.all()
This works, but is very slow:
10:26:39.908 [debug] QUERY OK source="gadm_410" db=2820.3ms queue=0.1ms idle=1446.3ms
SELECT DISTINCT g0."gid_3", g0."name_3" FROM "gadm_410" AS g0 WHERE (g0."gid_3" != '') AND (g0."gid_4" = '') []
↳ :elixir.eval_external_handler/3, at: src/elixir.erl:386
In contrast, when I paste exactly the same SQL as the output shows into SQLIte Studio, it executes in ~1ms, which is what I’d have anticipated with indexes available for all of the columns I’m working with.
To diagnose, firstly I’ve tried to use explain but can’t see any straightforward way to get Ecto to explain a query like this. Is there a function for that?
Secondly, since the indexes are clearly being built and then used when I execute the query elsewhere, why would Ecto not be using them? Even without the explain I can intuit that this is what’s happening as deleting the indexes yields almost identical execution times, so it seems they’re not having any effect.
Most Liked
ruslandoga
Just a guess: gid_4 might be picked because your query uses the equality operator with it, and on gid_3 it uses != which probably gets ignored.
Possible workarounds:
- running ANALYZE (probably won’t work)
- compiling with SQLITE_ENABLE_STAT4 (and running ANALYZE) you can use Built-In Scalar SQL Functions to find out if this option was used, seems like Exqlite compiles with that option by default: exqlite/Makefile at main · elixir-sqlite/exqlite · GitHub
- The INDEXED BY Clause (can be added via Ecto.Query — Ecto v3.14.0) or Built-In Scalar SQL Functions
- rewriting the query to not use !=, this can be done with a subquery that picks all unique values from gid_3

LostKobrakai
Ecto has no influence on the db using an index or not. You’d want to make sure the queries are indeed the same (including using parameters and prepared queries or not).
cd-slash
Thanks, I’d tried that but couldn’t get it working for SQLite, seemed to only be for Postgres / MySQL?
Ecto has no influence on the db using an index or not. You’d want to make sure the queries are indeed the same (including using parameters and prepared queries or not).
Noted, I’ll try to ensure the queries are identical and continue trying to find a way to profile the query from Ecto
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