GordianGo
Howto set the decimal separator when reading with CSV.decode() or Explorer.DataFrame.load_csv()
Hi,
my csv file that i want to read is from DE-region (Germany). There they use comma as decimal separator for floating point numbers. eg 4,58
Unfortunately I cannot identitfy a parameter in the documentation to specify another decimal separator for these functions:
Because of the decimal separator (in my case “,” instead of “.”) it will throw an error if defining the datatype of the columns in the csv file on reading with CSV.decode (..) or Dataframe.load_csv(..)
Example:
df = DF.load_csv!(content, dtypes: [{“myFloatCol”,:f64}])
→ throws the expected error:
RuntimeError{message: "Polars Error: could not parse \"4,58\" as dtype f64 at column ‘myFloatCol’ (column number 4)
What would be a good practice?"
Thanks for your advice
Gordian
Most Liked
al2o3cr
You could use field_transform to accomplish most of this, by passing String.replace:
String.replace("-123,45", ~r/^(-?)(\d+),(\d+)$/, "\\1\\2.\\3")
(adjust further if you’re expecting scientific notation too)
dimitarvp
Can you give an example of a few CSV rows? F.ex. do they look like this?
ABC,123,4,58,DEF
And you expect ["ABC", "123", "4.58", "DEF"] but get ["ABC", "123", "4", "58", "DEF"] instead? Is that the problem? Sounds like you basically have an invalid CSV when we get down to it. Don’t think that even field_transform can help you in this case.
You can use the xsv tool to extract the “defective” columns and reformat the numbers to be dot-separated and then you can re-merge (or replace) the data back – I’ve done something very similar in the past, successfully. From then on you can just use any normal CSV parser.
billylanchantin
I did some digging. Polars actually has a relevant option to polars.read_csv() called decimal_comma that Explorer does not expose:
decimal_comma
Parse floats using a comma as the decimal separator instead of a period.
We could certainly expose it. However even if it were exposed, you can’t use it for your example because your CSV also has a , as the separator:
polars.exceptions.InvalidOperationError: 'decimal_comma' argument cannot be combined with ',' separator
So it seems Polars, and therefore Explorer, requires a certain subset of CSV to parse directly into a float like you’re hoping to do.
However @dimitarvp is right to call out mutate. General rule with Explorer: it’s usually fastest to get Rust to do the work if you can. So I suggest the following:
require Explorer.DataFrame, as: DataFrame
csv_path
|> DataFrame.from_csv!()
|> DataFrame.mutate(for col <- across() do
{col.name, col |> replace(",", ".") |> cast(:f64)}
end)
With this approach, you load what happens to be in the CSV into Rust, then let Rust do the string manipulation.
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